PyBindingCurve, Simulation, and Curve Fitting to Complex Binding Systems at Equilibrium
نویسندگان
چکیده
Understanding multicomponent binding interactions in protein–ligand, protein–protein, and competition systems is essential for fundamental biology drug discovery. Hand-deriving equations quickly become unfeasible when the number of components increased, direct analytical solutions only exist to a certain complexity. To address this problem allow easy access simulation, plotting, parameter fitting complex at equilibrium, we present Python package PyBindingCurve. We apply software explore homodimer heterodimer formations culminating discovery that under conditions, homodimers are easier break with an inhibitor than heterodimers may also be more readily depleted. This potentially valuable overlooked phenomenon great importance PyBindingCurve expanded operate on any equilibrium system allows definition custom using simple syntax. available MIT license https://github.com/stevenshave/pybindingcurve as source code accompanied by examples easily installable within Package Index.
منابع مشابه
Is dynamical systems modeling just curve fitting?
The development of mathematical tools for describing dynamical systems has made it possible to characterize forms of behavior that could not be characterized before. This represents progress, but the enterprise runs the risk of being nothing more than curve fitting if investigators fail to identify the physical, biological, or psychological mechanisms which are common to systems that follow the...
متن کاملSignal detection Using Rational Function Curve Fitting
In this manuscript, we proposed a new scheme in communication signal detection which is respect to the curve shape of received signal and based on the extraction of curve fitting (CF) features. This feature extraction technique is proposed for signal data classification in receiver. The proposed scheme is based on curve fitting and approximation of rational fraction coefficients. For each symbo...
متن کاملCurve Fitting and Polymers
1 Curve Fitting and Polymers The availability of data from well-characterized samples such as those offered by Beamson and Briggs [1] owe much to the popularity of XPS as a tool for understanding the chemistry of polymers. A typical C 1s envelope [2] (Figure 1) includes structure that offers chemical information about a sample, but without some initial starting point it is difficult to construc...
متن کاملA Bayesian Curve Fitting Approach to
A Bayesian method of estimating the power spectra of stationary random processes is proposed. Initially we estimate the true spectra via the log pe-riodogram but due to the inadequacies of the periodogram when the true spectrum has a high dynamic range and/or is rapidly varying for such problems we use the multitaper spectrum estimates which have known error distributions. Piecewise polynomials...
متن کاملDiscrete Polynomial Curve Fitting to Noisy Data
A discrete polynomial curve is defined as a set of points lying between two polynomial curves. This paper deals with the problem of fitting a discrete polynomial curve to given integer points in the presence of outliers. We formulate the problem as a discrete optimization problem in which the number of points included in the discrete polynomial curve, i.e., the number of inliers, is maximized. ...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Journal of Chemical Information and Modeling
سال: 2021
ISSN: ['1549-960X', '1549-9596']
DOI: https://doi.org/10.1021/acs.jcim.1c00216